Publications

Journal articles, preprints, and software papers.

Grouped by year. # indicates equal contribution.

2026

10

Plunkett, E., Deng, Y., Slager, D. L., Fuentes, M., Chen, Y., Van Doren, B. M., Dokter, A. M. & Sheldon, D.

Novel Estimates of Bird Migration Traffic at the Continental Scale Using Participatory Science Data.

Global Ecology and Biogeography, 35(4), e70236.

9

Li, L., Zuzuarregui, M., Bai, J., Sun, S., Chen, Y., & Wang, Z.

Hurricanes drive bird displacement revealed by deep learning species distribution models.

Ecological Informatics, 103785.

8

Hou, X., Pan, S., Xu, J., Hu, L., He, W., Liu, X., Huang, Gu, Z., Lin, Z., Chen, Y., Li, W., Luo, T., Zhao, X., Dai, Q., Cao, P., Liu, F., Feng, X., Fu, Q., Zhou, J., Wang, J. & Zhan, X.

Genetic legacy and recent cross of two ancient lineages underlie the rebound of the world's rarest primate.

Science Advances, 12(7), eadw3298.

2025

7

Chen, Y., Slager, D. L., Plunkett, E., Fuentes, M., Deng, Y., Mackenzie, S. A., Berrigan, L. E., Fink, D., Sheldon, D., Van Doren, B. M., & Dokter, A. M.

Population-level migration modeling of North American birds through data integration with BirdFlow.

bioRxiv 2025.09.30.679621.

6

Lin, Y., Li, B., Shi, X., Chen, Y., Pan, S., Lin, Z., Gu, Z., Hailer, F., Hu, L. & Zhan, X.

Homeostasis of glucose and lipid metabolism during physiological responses to a simulated hypoxic high altitude environment.

Nature Communications, 16(1), p.9406.

5

Zhang, W., Gu, Z., Chen, Y., Zhang, R., & Zhan, X.

Birds migrate longitudinally in response to the resultant Asian monsoons of the Qinghai-Tibet Plateau uplift.

eLife, 14:RP103971.

2024

4

Han, Z.#, Chen, Y. #, Dai, X., Yu, C., Cheng, J., Li, J., & Mao, K.

The revelation of genomic breed composition using target capture sequencing: a case of Taxodium.

Forestry Research, 4, e034.

3

Chen, Y., Gu, Z. & Zhan, X.

stemflow: A Python Package for Adaptive Spatio-Temporal Exploratory Model.

Journal of Open Source Software, 9(94), 6158.

2023

2

Shao, Z., Hou, X., Chen, Y., Lin, Z., & Zhan, X.

RNA sampling time on postmortem avian carcasses in the wild.

Wildlife Biology, e01157.

2021

1

Chen, Y., Wang, Y., Li, J., Wang, W., Feng, D., & Mao, K.

Principles, error sources and application suggestions of prevailing molecular dating methods.

Biodiversity Science, 29(5), 629.